PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn266121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 274aa    MW: 30200.7 Da    PI: 7.7142
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn266121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.57.9e-37101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++++e+i w+e g++fvv+++++fak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell +i+
    Achn266121  10 FLMKTYELVDDQTTNEVIGWNEGGTTFVVWKTDDFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKELLAQIR 97 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn266121  98 RRKTA 102
                   **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.3E-56699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.72E-34799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-38799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGQRALPAPF LMKTYELVDD QTTNEVIGWN EGGTTFVVWK TDDFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLAQIRRRK TATSAPAAAA KSAAGPSSPS  120
NSGNDLGSTS MSSPDSKNAG SVDAPAARAQ LTDLSDENRK LKRDNEMLTS ELARAKRHCS  180
ELIAFLTNYV KVAPDQIDHI MRQESSGPTL SGLDGEIGST GHNNGNYEED NDNEIMKEEN  240
GEGLKLFGVW LKGDGKKRVR EENLGFGGVH PKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-25210413125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047250.11e-123Heat shock factor 4
SwissprotP223351e-111HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A061DGX91e-123A0A061DGX9_THECC; Heat shock factor 4
STRINGVIT_07s0031g00670.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.16e-73heat shock factor 4